STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005029897Methionine sulfoxide reductase B1b. (92 aa)    
Predicted Functional Partners:
LOC115438545
Thioredoxin-like.
   
 0.780
mrpl20
Mitochondrial ribosomal protein L20.
   
 
 0.708
ENSSORP00005053644
annotation not available
  
 0.708
LOC115414734
Mitochondrial peptide methionine sulfoxide reductase-like.
  
 
 0.670
ENSSORP00005048118
Si:ch1073-358c10.1.
  
 
 0.670
ENSSORP00005050331
annotation not available
  
 
 0.670
ENSSORP00005007717
annotation not available
   
 0.668
ENSSORP00005014876
annotation not available
   
 0.668
ENSSORP00005043854
Frataxin.
    
 
 0.637
cat
Catalase.
   
  
 0.629
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.