STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAPGEF6Rap guanine nucleotide exchange factor 6. (1614 aa)    
Predicted Functional Partners:
LOC115422421
Ras-related protein Rap-1A.
   
 0.953
rap1b
RAP1B, member of RAS oncogene family.
   
 0.953
LOC115419406
Ras-related protein Rap-1A-like.
   
 0.913
mras
Muscle RAS oncogene homolog.
   
 0.907
ENSSORP00005024082
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
    
 0.889
LOC115422118
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.
    
 0.889
ENSSORP00005021649
Membrane associated guanylate kinase, WW and PDZ domain containing 1a.
    
 0.864
ENSSORP00005023320
Membrane associated guanylate kinase, WW and PDZ domain containing 1b.
    
 0.864
LOC115424623
Ras-related protein R-Ras-like.
   
 0.859
ENSSORP00005058001
RAS related 2.
   
 0.859
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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