STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1aYip1 interacting factor homolog A, membrane trafficking protein. (308 aa)    
Predicted Functional Partners:
LOC115434208
Protein YIPF4.
   
 
 0.843
rabac1
Rab acceptor 1.
   
 
 0.805
selenos
Selenoprotein S.
   
 
 0.789
yipf5
Yip1 domain family member 5.
   
 
 0.789
LOC115416913
Protein YIPF5-like.
   
 
 0.789
maea
Macrophage erythroblast attacher.
   
 
 0.678
yipf3
Yip1 domain family member 3.
   
  
 0.539
unc50
Unc-50 inner nuclear membrane RNA binding protein.
      
 0.538
LOC115438283
Ras-related protein Rab-1A-like.
   
 
 0.475
LOC115417204
Ras-related protein ORAB-1.
   
 
 0.475
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.