ENSSORP00005030535 protein (Sphaeramia orbicularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSORP00005030535

annotation not available (208 aa)

Predicted Functional Partners:

ENSSORP00005004242

0.953

ENSSORP00005012668

0.953

ENSSORP00005030536

0.944

ENSSORP00005012669

0.942

ENSSORP00005030531

0.939

ENSSORP00005000824

0.933

ENSSORP00005044746

0.900

ENSSORP00005044745

0.899

ENSSORP00005053644

0.896

ENSSORP00005024277

0.894

Your Current Organism:

Sphaeramia orbicularis

NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSORP00005000824	ENSSORP00005012668	annotation not available	annotation not available	0.406
ENSSORP00005000824	ENSSORP00005012669	annotation not available	annotation not available	0.492
ENSSORP00005000824	ENSSORP00005024277	annotation not available	annotation not available	0.894
ENSSORP00005000824	ENSSORP00005030535	annotation not available	annotation not available	0.933
ENSSORP00005000824	ENSSORP00005053644	annotation not available	annotation not available	0.894
ENSSORP00005004242	ENSSORP00005012669	annotation not available	annotation not available	0.937
ENSSORP00005004242	ENSSORP00005024277	annotation not available	annotation not available	0.894
ENSSORP00005004242	ENSSORP00005030535	annotation not available	annotation not available	0.953
ENSSORP00005004242	ENSSORP00005030536	annotation not available	annotation not available	0.425
ENSSORP00005004242	ENSSORP00005053644	annotation not available	annotation not available	0.891
ENSSORP00005012668	ENSSORP00005000824	annotation not available	annotation not available	0.406
ENSSORP00005012668	ENSSORP00005012669	annotation not available	annotation not available	0.951
ENSSORP00005012668	ENSSORP00005024277	annotation not available	annotation not available	0.894
ENSSORP00005012668	ENSSORP00005030535	annotation not available	annotation not available	0.953
ENSSORP00005012668	ENSSORP00005030536	annotation not available	annotation not available	0.414
ENSSORP00005012668	ENSSORP00005053644	annotation not available	annotation not available	0.891
ENSSORP00005012669	ENSSORP00005000824	annotation not available	annotation not available	0.492
ENSSORP00005012669	ENSSORP00005004242	annotation not available	annotation not available	0.937
ENSSORP00005012669	ENSSORP00005012668	annotation not available	annotation not available	0.951
ENSSORP00005012669	ENSSORP00005024277	annotation not available	annotation not available	0.894