STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115437136E3 ubiquitin-protein ligase RNF220-like. (347 aa)    
Predicted Functional Partners:
ENSSORP00005009352
Ring finger protein 220b.
 
      0.895
RNF220
E3 ubiquitin-protein ligase Rnf220-like.
 
      0.737
ENSSORP00005021452
annotation not available
    
  0.654
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.583
ENSSORP00005036459
annotation not available
    
  0.576
ENSSORP00005029795
annotation not available
    
  0.574
ENSSORP00005029797
annotation not available
    
  0.574
ENSSORP00005049858
Myb-like, SWIRM and MPN domains 1.
    
 0.569
YTHDC2
YTH domain containing 2.
    
  0.530
zc4h2
Zinc finger C4H2-type containing.
    
 
 0.519
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.