STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtf2Replication termination factor 2. (303 aa)    
Predicted Functional Partners:
trmt1
tRNA methyltransferase 1.
    
   0.736
trmt1l
tRNA methyltransferase 1 like.
    
   0.568
ENSSORP00005006104
Polycystic kidney disease 1a.
   
  
 0.542
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.541
ENSSORP00005009860
Coiled-coil domain containing 130.
      
 0.540
zfand4
Zinc finger AN1-type containing 4.
      
 0.539
prpf18
pre-mRNA processing factor 18.
      
 0.529
ess2
Ess-2 splicing factor homolog.
      
 0.529
ubxn7
UBX domain protein 7.
      
 0.529
LOC115422769
Non-structural maintenance of chromosomes element 3 homolog.
      
 0.495
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.