STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac8Histone deacetylase 8. (396 aa)    
Predicted Functional Partners:
ENSSORP00005001606
Translocase of outer mitochondrial membrane 20.
    
 0.991
ENSSORP00005032619
AT rich interactive domain 4A (RBP1-like).
    
 0.991
ENSSORP00005035149
annotation not available
    
 0.991
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.984
ing1
Inhibitor of growth family member 1.
    
 0.962
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.961
rb1
RB transcriptional corepressor 1.
   
 0.954
kdm1a
Lysine demethylase 1A.
   
 0.939
mbd3
methyl-CpG binding domain protein 3.
    
 0.930
sap30l
SAP30 like.
    
 0.930
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.