STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frmd8FERM domain containing 8. (471 aa)    
Predicted Functional Partners:
itgb1bp1
Integrin subunit beta 1 binding protein 1.
    
 
 0.907
c9h12orf43
Chromosome 9 C12orf43 homolog.
   
    0.689
LOC115427823
Sorting nexin-27-like.
    
 
 0.554
SNX27
Sorting nexin 27.
    
 
 0.554
snx17
Sorting nexin 17.
    
 
 0.554
LOC115431459
Ras-related protein Rap-2a-like.
    
  0.535
ENSSORP00005000316
RASD family member 2.
    
  0.535
LOC115424966
Ras-related protein Rap-1b-like.
    
  0.535
LOC115419757
Beta-crystallin B3-like.
    
  0.535
rasl12
RAS like family 12.
    
  0.535
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.