STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005033936Membrane-associated ring finger (C3HC4) 6. (882 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.951
syvn1
Synoviolin 1.
    
 0.931
amfr
Autocrine motility factor receptor.
    
 0.931
ENSSORP00005006784
CCR4-NOT transcription complex, subunit 2.
    
 0.925
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.925
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.894
derl2
Derlin 2.
    
 0.856
marchf6
Membrane associated ring-CH-type finger 6.
  
  
 
0.841
vcp
Valosin containing protein.
    
 0.822
spata5l1
Spermatogenesis associated 5 like 1.
    
 0.822
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.