STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc6Structural maintenance of chromosomes 6. (1091 aa)    
Predicted Functional Partners:
LOC115422769
Non-structural maintenance of chromosomes element 3 homolog.
   
 0.999
nsmce4a
NSE4 homolog A, SMC5-SMC6 complex component.
   
 0.999
nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
    
 0.999
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
    
 0.999
ENSSORP00005057477
annotation not available
   
0.992
ENSSORP00005057502
annotation not available
   
0.992
smc3
Structural maintenance of chromosomes 3.
   
0.971
ncaph
non-SMC condensin I complex subunit H.
   
 0.962
ENSSORP00005026496
non-SMC condensin I complex, subunit D2.
   
 0.959
mrpl45
Mitochondrial ribosomal protein L45.
    
 0.955
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.