STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCRT1Scratch family transcriptional repressor 1. (280 aa)    
Predicted Functional Partners:
kpnb1
Karyopherin subunit beta 1.
    
   0.519
ENSSORP00005002471
REST corepressor 2.
    
 0.432
ENSSORP00005044645
REST corepressor 1.
    
 0.432
ENSSORP00005051201
annotation not available
    
 0.432
LOC115426950
F-box/WD repeat-containing protein 11.
    
 
 0.410
KDM1B
Lysine demethylase 1B.
    
 0.406
kdm1a
Lysine demethylase 1A.
    
 0.406
ENSSORP00005049346
Si:ch211-127i16.2.
    
 0.406
ENSSORP00005051416
Monoamine oxidase.
    
 0.406
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.