STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6Programmed cell death 6. (185 aa)    
Predicted Functional Partners:
ENSSORP00005004965
annotation not available
    
 0.931
ENSSORP00005005651
SEC31 homolog B, COPII coat complex component.
    
 0.931
ENSSORP00005050882
SEC31 homolog A, COPII coat complex component.
    
 0.931
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.890
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.883
CUL3
Cullin-3-like.
    
 0.836
LOC115431416
Cullin-3.
    
 0.836
klhl8
Kelch like family member 8.
    
 0.831
ENSSORP00005001086
Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila).
    
  0.826
klhl7
Kelch like family member 7.
    
  0.826
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.