STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115423001NUAK family SNF1-like kinase 1. (697 aa)    
Predicted Functional Partners:
ENSSORP00005029089
Serine/threonine kinase 11.
    
0.740
tp53
Tumor protein p53.
    
 0.562
prkaa1
Protein kinase AMP-activated catalytic subunit alpha 1.
  
 
0.518
prkaa2
Protein kinase AMP-activated catalytic subunit alpha 2.
  
 
0.516
LOC115428594
Tribbles homolog 1-like.
  
 
0.514
ENSSORP00005035412
annotation not available
  
 
0.514
ENSSORP00005031862
Si:ch211-22d5.2.
  
 
0.512
LOC115415718
Tribbles homolog 2-like.
  
 
0.512
ENSSORP00005019307
annotation not available
  
 
0.510
nim1k
NIM1 serine/threonine protein kinase.
  
 
0.502
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.