STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc4Zinc finger CCHC-type containing 4. (498 aa)    
Predicted Functional Partners:
ENSSORP00005054929
Nucleolar protein 6 (RNA-associated).
   
    0.838
ENSSORP00005034128
Aminoadipate-semialdehyde dehydrogenase.
   
    0.835
ENSSORP00005034129
annotation not available
   
    0.835
pfdn6
Prefoldin subunit 6.
   
    0.834
prpf38a
pre-mRNA processing factor 38A.
   
    0.834
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.834
gpn3
GPN-loop GTPase 3.
   
    0.834
med22
Mediator complex subunit 22.
   
    0.834
ENSSORP00005049086
Component of oligomeric golgi complex 3.
   
    0.834
mrpl2
Mitochondrial ribosomal protein L2.
   
    0.834
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.