STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab5aRAB5A, member RAS oncogene family. (221 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.974
LOC115425892
Rab5 GDP/GTP exchange factor-like.
   
 0.974
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.965
eea1
Early endosome antigen 1.
    
 0.962
rbsn
Rabenosyn, RAB effector.
   
 0.932
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.911
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 
 0.911
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.901
ENSSORP00005009947
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.875
ENSSORP00005033104
annotation not available
    
 0.875
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.