aggf1 protein (Sphaeramia orbicularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aggf1

Angiogenic factor with G-patch and FHA domains 1. (745 aa)

Predicted Functional Partners:

utp6

0.906

ENSSORP00005054929

0.902

imp3

0.899

bysl

0.898

rrp36

0.896

ddx18

0.867

LOC115439703

0.855

ddx10

0.839

nop14

0.823

utp3

0.791

Your Current Organism:

Sphaeramia orbicularis

NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSORP00005054929	LOC115439703	ENSSORP00005054929	ENSSORP00005026279	Nucleolar protein 6 (RNA-associated).	Ribosomal L1 domain-containing protein 1-like.	0.999
ENSSORP00005054929	aggf1	ENSSORP00005054929	ENSSORP00005038979	Nucleolar protein 6 (RNA-associated).	Angiogenic factor with G-patch and FHA domains 1.	0.902
ENSSORP00005054929	bysl	ENSSORP00005054929	ENSSORP00005048788	Nucleolar protein 6 (RNA-associated).	Bystin like.	0.999
ENSSORP00005054929	ddx10	ENSSORP00005054929	ENSSORP00005019587	Nucleolar protein 6 (RNA-associated).	DEAD-box helicase 10.	0.999
ENSSORP00005054929	ddx18	ENSSORP00005054929	ENSSORP00005021741	Nucleolar protein 6 (RNA-associated).	DEAD-box helicase 18.	0.972
ENSSORP00005054929	imp3	ENSSORP00005054929	ENSSORP00005027526	Nucleolar protein 6 (RNA-associated).	IMP U3 small nucleolar ribonucleoprotein 3.	0.999
ENSSORP00005054929	nop14	ENSSORP00005054929	ENSSORP00005039033	Nucleolar protein 6 (RNA-associated).	NOP14 nucleolar protein.	0.999
ENSSORP00005054929	rrp36	ENSSORP00005054929	ENSSORP00005052558	Nucleolar protein 6 (RNA-associated).	Ribosomal RNA processing 36.	0.989
ENSSORP00005054929	utp3	ENSSORP00005054929	ENSSORP00005022530	Nucleolar protein 6 (RNA-associated).	UTP3 small subunit processome component.	0.999
ENSSORP00005054929	utp6	ENSSORP00005054929	ENSSORP00005058594	Nucleolar protein 6 (RNA-associated).	UTP6 small subunit processome component.	0.999
LOC115439703	ENSSORP00005054929	ENSSORP00005026279	ENSSORP00005054929	Ribosomal L1 domain-containing protein 1-like.	Nucleolar protein 6 (RNA-associated).	0.999
LOC115439703	aggf1	ENSSORP00005026279	ENSSORP00005038979	Ribosomal L1 domain-containing protein 1-like.	Angiogenic factor with G-patch and FHA domains 1.	0.855
LOC115439703	bysl	ENSSORP00005026279	ENSSORP00005048788	Ribosomal L1 domain-containing protein 1-like.	Bystin like.	0.999
LOC115439703	ddx10	ENSSORP00005026279	ENSSORP00005019587	Ribosomal L1 domain-containing protein 1-like.	DEAD-box helicase 10.	0.976
LOC115439703	ddx18	ENSSORP00005026279	ENSSORP00005021741	Ribosomal L1 domain-containing protein 1-like.	DEAD-box helicase 18.	0.999
LOC115439703	imp3	ENSSORP00005026279	ENSSORP00005027526	Ribosomal L1 domain-containing protein 1-like.	IMP U3 small nucleolar ribonucleoprotein 3.	0.998
LOC115439703	nop14	ENSSORP00005026279	ENSSORP00005039033	Ribosomal L1 domain-containing protein 1-like.	NOP14 nucleolar protein.	0.999
LOC115439703	rrp36	ENSSORP00005026279	ENSSORP00005052558	Ribosomal L1 domain-containing protein 1-like.	Ribosomal RNA processing 36.	0.953
LOC115439703	utp3	ENSSORP00005026279	ENSSORP00005022530	Ribosomal L1 domain-containing protein 1-like.	UTP3 small subunit processome component.	0.997
LOC115439703	utp6	ENSSORP00005026279	ENSSORP00005058594	Ribosomal L1 domain-containing protein 1-like.	UTP6 small subunit processome component.	0.999