STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115420141Retinoic acid receptor gamma-A-like. (495 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
    
 0.840
ENSSORP00005025329
annotation not available
   
0.806
zbtb16
Zinc finger and BTB domain containing 16.
    
 0.760
RXRB
Retinoic acid receptor RXR-beta-A.
   
0.753
LOC115435120
Retinoic acid receptor RXR-beta-A-like.
   
0.753
ENSSORP00005048926
Retinoid X receptor, alpha a.
   
0.753
ENSSORP00005022636
Nuclear receptor corepressor 2.
    
 0.744
ENSSORP00005038694
Nuclear receptor corepressor 1.
    
 0.744
ENSSORP00005038768
annotation not available
    
 0.744
spi1
Spi-1 proto-oncogene.
    
 0.722
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.