STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005041293Catenin (cadherin-associated protein), alpha 1. (931 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
   
 0.972
LOC115428257
Catenin beta-1-like.
   
 0.958
vcl
Vinculin.
    
0.941
LOC115434218
Vinculin-like.
    
0.941
LOC115419697
Junction plakoglobin-like.
   
 0.939
ENSSORP00005021929
annotation not available
   
 0.938
ENSSORP00005003082
Afadin, adherens junction formation factor a.
    
 0.904
LOC115421190
Tight junction protein ZO-1-like.
   
 0.871
ENSSORP00005058195
Tight junction protein 1a.
   
 0.871
tlnrd1
Talin rod domain containing 1.
   
 0.864
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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