STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx5Sorting nexin 5. (424 aa)    
Predicted Functional Partners:
snx2
Sorting nexin 2.
   
0.948
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 0.947
snx8
Sorting nexin 8.
   
 0.919
LOC115420863
Sorting nexin-1-like.
   
0.901
ENSSORP00005057937
Sorting nexin 1b.
   
0.901
ENSSORP00005048562
VPS29 retromer complex component.
    
 0.897
vps26a
VPS26, retromer complex component A.
    
 0.889
LOC115416137
Vacuolar protein sorting-associated protein 35.
   
 0.884
ENSSORP00005032636
annotation not available
  
  
0.838
ENSSORP00005032637
Sorting nexin 6.
  
  
0.837
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.