STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115415730NLR family member X1-like. (957 aa)    
Predicted Functional Partners:
mavs
Mitochondrial antiviral signaling protein.
     
 0.929
LOC115414139
Pantothenate kinase 3-like.
    
  0.858
LOC115434232
Pantothenate kinase 1-like.
    
  0.858
traf6
TNF receptor associated factor 6.
   
 0.735
tufm
Tu translation elongation factor, mitochondrial.
    
 
 0.731
LOC115433947
Inhibitor of nuclear factor kappa-B kinase subunit alpha-like.
   
 0.727
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.727
LOC115410174
Inhibitor of nuclear factor kappa-B kinase subunit alpha-like.
   
 0.695
atg5
Autophagy related 5.
     
 0.677
atg12
Autophagy related 12.
     
 0.670
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.