ENSSORP00005043613 protein (Sphaeramia orbicularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSORP00005043613

Nuclear receptor subfamily 6, group A, member 1a. (469 aa)

Predicted Functional Partners:

ENSSORP00005022636

0.783

ENSSORP00005038694

0.783

ENSSORP00005038768

0.783

med1

0.756

hsp90b1

0.619

ENSSORP00005031031

0.601

LOC115437062

0.573

mul1

0.573

med14

0.571

rpl9

0.558

Your Current Organism:

Sphaeramia orbicularis

NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSORP00005022636	ENSSORP00005043613	ENSSORP00005022636	ENSSORP00005043613	Nuclear receptor corepressor 2.	Nuclear receptor subfamily 6, group A, member 1a.	0.783
ENSSORP00005022636	med1	ENSSORP00005022636	ENSSORP00005024127	Nuclear receptor corepressor 2.	Mediator complex subunit 1.	0.705
ENSSORP00005022636	rpl9	ENSSORP00005022636	ENSSORP00005052112	Nuclear receptor corepressor 2.	Ribosomal protein L9.	0.528
ENSSORP00005031031	ENSSORP00005043613	ENSSORP00005031031	ENSSORP00005043613	annotation not available	Nuclear receptor subfamily 6, group A, member 1a.	0.601
ENSSORP00005038694	ENSSORP00005043613	ENSSORP00005038694	ENSSORP00005043613	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 6, group A, member 1a.	0.783
ENSSORP00005038694	med1	ENSSORP00005038694	ENSSORP00005024127	Nuclear receptor corepressor 1.	Mediator complex subunit 1.	0.705
ENSSORP00005038694	rpl9	ENSSORP00005038694	ENSSORP00005052112	Nuclear receptor corepressor 1.	Ribosomal protein L9.	0.528
ENSSORP00005038768	ENSSORP00005043613	ENSSORP00005038768	ENSSORP00005043613	annotation not available	Nuclear receptor subfamily 6, group A, member 1a.	0.783
ENSSORP00005038768	med1	ENSSORP00005038768	ENSSORP00005024127	annotation not available	Mediator complex subunit 1.	0.705
ENSSORP00005038768	rpl9	ENSSORP00005038768	ENSSORP00005052112	annotation not available	Ribosomal protein L9.	0.528
ENSSORP00005043613	ENSSORP00005022636	ENSSORP00005043613	ENSSORP00005022636	Nuclear receptor subfamily 6, group A, member 1a.	Nuclear receptor corepressor 2.	0.783
ENSSORP00005043613	ENSSORP00005031031	ENSSORP00005043613	ENSSORP00005031031	Nuclear receptor subfamily 6, group A, member 1a.	annotation not available	0.601
ENSSORP00005043613	ENSSORP00005038694	ENSSORP00005043613	ENSSORP00005038694	Nuclear receptor subfamily 6, group A, member 1a.	Nuclear receptor corepressor 1.	0.783
ENSSORP00005043613	ENSSORP00005038768	ENSSORP00005043613	ENSSORP00005038768	Nuclear receptor subfamily 6, group A, member 1a.	annotation not available	0.783
ENSSORP00005043613	LOC115437062	ENSSORP00005043613	ENSSORP00005030746	Nuclear receptor subfamily 6, group A, member 1a.	Mitochondrial ubiquitin ligase activator of nfkb 1-A-like.	0.573
ENSSORP00005043613	hsp90b1	ENSSORP00005043613	ENSSORP00005012526	Nuclear receptor subfamily 6, group A, member 1a.	Heat shock protein 90 beta family member 1.	0.619
ENSSORP00005043613	med1	ENSSORP00005043613	ENSSORP00005024127	Nuclear receptor subfamily 6, group A, member 1a.	Mediator complex subunit 1.	0.756
ENSSORP00005043613	med14	ENSSORP00005043613	ENSSORP00005055669	Nuclear receptor subfamily 6, group A, member 1a.	Mediator complex subunit 14.	0.571
ENSSORP00005043613	mul1	ENSSORP00005043613	ENSSORP00005045608	Nuclear receptor subfamily 6, group A, member 1a.	Mitochondrial E3 ubiquitin protein ligase 1.	0.573
ENSSORP00005043613	rpl9	ENSSORP00005043613	ENSSORP00005052112	Nuclear receptor subfamily 6, group A, member 1a.	Ribosomal protein L9.	0.558