STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsa2NSA2 ribosome biogenesis factor. (260 aa)    
Predicted Functional Partners:
brix1
Biogenesis of ribosomes BRX1.
   
 0.999
bop1
BOP1 ribosomal biogenesis factor.
   
 0.999
eif6
Eukaryotic translation initiation factor 6.
   
 0.999
gnl2
G protein nucleolar 2.
   
 0.999
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.999
ddx18
DEAD-box helicase 18.
   
 0.999
rps3
Ribosomal protein S3.
   
 0.999
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.999
rpl23a
Ribosomal protein L23a.
   
 0.999
mrto4
MRT4 homolog, ribosome maturation factor.
   
 0.999
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.