STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1gProtein phosphatase, Mg2+/Mn2+ dependent 1G. (561 aa)    
Predicted Functional Partners:
ENSSORP00005005039
Ubiquitin specific peptidase 7 (herpes virus-associated).
   
 0.838
ENSSORP00005012980
Ubiquitin specific peptidase 40.
   
 0.696
med31
Mediator complex subunit 31.
    
  0.659
med21
Mediator complex subunit 21.
    
  0.650
ENSSORP00005044497
annotation not available
    
  0.650
med14
Mediator complex subunit 14.
    
  0.650
tab2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.629
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.629
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.623
trip12
Thyroid hormone receptor interactor 12.
      
 0.614
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.