STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115425119LIM/homeobox protein Lhx6-like. (309 aa)    
Predicted Functional Partners:
ldb2
LIM domain binding 2.
    
 0.681
LOC115433974
LIM domain-binding protein 1-like.
    
 0.681
LOC115419720
LIM domain-binding protein 1.
    
 0.681
ENSSORP00005047019
GATA binding protein 4.
   
 0.656
LOC115426221
Factor in the germline alpha-like.
   
 0.581
ENSSORP00005023722
Folliculogenesis specific bHLH transcription factor.
   
 0.581
ENSSORP00005021885
annotation not available
    
 0.574
srf
Serum response factor.
    
 0.574
ascl1
Achaete-scute family bHLH transcription factor 1.
    
 0.559
gata6
GATA binding protein 6.
   
 0.551
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.