STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edil3EGF like repeats and discoidin domains 3. (436 aa)    
Predicted Functional Partners:
pros1
Protein S.
   
 0.893
ENSSORP00005043854
Frataxin.
     
 0.807
mcfd2
Multiple coagulation factor deficiency 2.
     
 0.763
ENSSORP00005018415
Si:ch211-254p10.2.
    
 0.753
slc40a1
Solute carrier family 40 member 1.
    
 0.753
ENSSORP00005009705
Lectin, mannose-binding, 1.
    
 0.748
ENSSORP00005010500
Lectin, mannose-binding, 1.
    
 0.748
crim1
Cysteine rich transmembrane BMP regulator 1.
    
 0.743
ENSSORP00005023195
ATPase copper transporting beta.
  
 
 0.741
atp7a
ATPase copper transporting alpha.
  
 
 0.741
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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