STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005053982PAT1 homolog 2. (277 aa)    
Predicted Functional Partners:
LOC115420632
CCR4-NOT transcription complex subunit 1.
    
 0.980
lsm1
LSM1 homolog, mRNA degradation associated.
    
 0.980
ENSSORP00005043329
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.978
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.978
dcp2
Decapping mRNA 2.
    
 0.975
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.971
ENSSORP00005058024
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.967
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.966
edc4
Enhancer of mRNA decapping 4.
    
 0.964
dcp1a
Decapping mRNA 1A.
    
 0.964
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.