STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pabpn1poly(A) binding protein nuclear 1. (284 aa)    
Predicted Functional Partners:
ENSSORP00005027540
poly(A) polymerase gamma.
   
 0.975
cstf2
Cleavage stimulation factor subunit 2.
   
0.968
LOC115438830
Apoptotic chromatin condensation inducer in the nucleus-like.
   
 0.967
sap18
Sin3A associated protein 18.
   
 0.965
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.951
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.933
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.928
fip1l1
Factor interacting with PAPOLA and CPSF1.
   
 0.916
ENSSORP00005039276
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.906
pnn
Pinin, desmosome associated protein.
   
 0.900
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.