STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B. (508 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
    
 0.986
ENSSORP00005040377
annotation not available
   
 0.976
LOC115415854
Vacuolar protein sorting-associated protein VTA1 homolog.
   
 0.976
ist1
IST1 factor associated with ESCRT-III.
   
 0.973
chmp2b
Charged multivesicular body protein 2B.
   
 0.971
chmp1a
Charged multivesicular body protein 1A.
   
 0.968
tm9sf1
Transmembrane 9 superfamily member 1.
   
 0.967
chmp3
Charged multivesicular body protein 3.
   
 0.965
LOC115424927
Charged multivesicular body protein 6-like.
    
 0.963
CHMP6
Charged multivesicular body protein 6-like.
    
 0.963
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.