Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0010Hypothetical protein. (216 aa)    
Predicted Functional Partners:
BF49_0008
Multidrug and toxin extrusion MATE family efflux pump YdhENorM homolog.
       0.780
BF49_0009
Hypothetical protein.
       0.773
BF49_1748
FIG00440295 hypothetical protein.
  
     0.736
BF49_0255
2hydroxychromene2carboxylate isomerase family protein glutathionedependent.
  
     0.672
BF49_5925
14dihydroxy2naphthoylCoA hydrolase EC 31228 in phylloquinone biosynthesis.
 
     0.654
BF49_3228
Transcriptional regulator TetR family.
  
     0.628
BF49_6045
2hydroxychromene2carboxylate isomerase.
  
     0.615
BF49_4154
FIG00440809 hypothetical protein.
 
     0.556
BF49_3994
FIG00445140 hypothetical protein.
  
   
 0.547
BF49_1848
FIG00442018 hypothetical protein.
  
  
  0.512
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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