Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0011FIG00443355 hypothetical protein. (371 aa)    
Predicted Functional Partners:
BF49_6118
Putative ironsulfur cluster assembly scaffold protein for SUF system SufE2.
   
    0.744
BF49_4150
TRAP dicarboxylate transporter DctQ subunit unknown substrate 3.
  
     0.611
BF49_3911
Possible outer membrane protein.
  
   
 0.572
BF49_1189
Efflux transporter RND family MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.553
BF49_0012
Immuneresponsive protein 1.
       0.551
BF49_0440
FIG00443183 hypothetical protein.
 
     0.536
BF49_3317
FIG00441143 hypothetical protein.
  
     0.535
BF49_2972
FIG00439885 hypothetical protein.
  
     0.528
BF49_4846
Bll6811 hypothetical protein.
   
    0.524
BF49_0636
Bll0142 protein.
  
     0.517
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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