Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0012Immuneresponsive protein 1. (455 aa)    
Predicted Functional Partners:
BF49_2777
COGs COG3777.
 
  
 0.846
BF49_7308
Biphenyl23diol 12dioxygenase IIIrelated protein.
 
  
 0.840
BF49_6364
Bll5266 protein; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily.
 
 
 0.812
BF49_0597
Citrate synthase si EC 2331; Belongs to the citrate synthase family.
  
 
 0.777
BF49_0598
Citrate synthase si EC 2331.
  
 
 0.777
BF49_6722
Citrate synthase si EC 2331; Belongs to the citrate synthase family.
  
 
 0.777
BF49_6288
FIG00441887 hypothetical protein.
  
 
 0.762
BF49_0391
Aconitate hydratase EC 4213; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.642
BF49_2830
Biotin carboxylase EC 63414.
  
    0.602
BF49_4864
HydroxymethylglutarylCoA lyase EC 4134; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.582
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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