Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0025Universal stress protein UspA and related nucleotidebinding proteins. (164 aa)    
Predicted Functional Partners:
BF49_3990
Putative transmembrane protein.
 
     0.798
BF49_3991
Membrane protein putative.
 
   
 0.795
BF49_0607
ABCtype cobalaminFe3siderophores transport systems ATPase components.
  
     0.657
BF49_2976
FIG018229 hypothetical protein.
  
     0.632
trpS
TryptophanyltRNA synthetase EC 6112; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.570
BF49_3320
Periplasmic thioldisulfide oxidoreductase DsbB required for DsbA reoxidation.
  
     0.570
BF49_0026
NifUlike domain protein.
     
 0.534
fur
Ferric uptake regulation protein FUR; Belongs to the Fur family.
 
   
 0.493
BF49_1575
Thymidine phosphorylase EC 2424.
 
    0.488
BF49_0148
Bll0692 protein.
  
   
 0.484
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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