Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0028RibosomalproteinS18palanine acetyltransferase EC 231. (161 aa)    
Predicted Functional Partners:
BF49_0027
TsaB protein required for threonylcarbamoyladenosine t6A formation in tRNA.
 
 0.899
fur
Ferric uptake regulation protein FUR; Belongs to the Fur family.
     
 0.685
BF49_0030
Hydrolase in polyol utilization gene cluster haloacid dehalogenaselike family.
       0.683
BF49_0026
NifUlike domain protein.
       0.594
BF49_7352
TsaB protein required for threonylcarbamoyladenosine t6A formation in tRNA.
 
 0.575
BF49_0687
Haloacid dehalogenase type II EC 3812.
  
    0.536
miaB
tRNAi6A37 methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
  
 0.483
BF49_0032
Phosphate starvationinducible protein PhoH predicted ATPase.
  
    0.470
ybeY
Metaldependent hydrolase YbeY involved in rRNA andor ribosome maturation and assembly; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.435
ybeY-2
Metaldependent hydrolase YbeY involved in rRNA andor ribosome maturation and assembly; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.435
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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