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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA guanine46N7methyltransferase EC 21133; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (236 aa)    
Predicted Functional Partners:
BF49_0040
Bll0789 putative carboxypeptidase EC 341711.
       0.781
truB
tRNA pseudouridine synthase B EC 42170; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.723
BF49_7370
tRNA pseudouridine synthase B EC 42170.
 
 
 0.723
BF49_7373
tRNA pseudouridine synthase B EC 42170.
 
 
 0.723
BF49_7378
tRNA pseudouridine synthase B EC 42170.
 
 
 0.723
rpmD
LSU ribosomal protein L30p L7e.
   
    0.714
rlmE
Heat shock protein FtsJRrmJ Ribosomal RNA large subunit methyltransferase E EC 211; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
 
 0.676
BF49_0039
Putative transcriptional regulatory protein.
     
 0.623
rsmA
SSU rRNA adenine1518N6adenine1519N6 dimethyltransferase EC 211182; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.612
truA
tRNA pseudouridine synthase A EC 42170; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
 0.611
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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