Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0054COG2740 Predicted nucleicacidbinding protein implicated in transcription termination ribosomal protein L7Ae family protein. (227 aa)    
Predicted Functional Partners:
BF49_0052
FIG000325 clustered with transcription termination protein NusA.
 
  
 0.898
BF49_0051
Translation initiation factor 2.
 
  
 0.888
BF49_0053
Transcription termination protein NusA.
  
    0.879
BF49_0048
FIG000325 clustered with transcription termination protein NusA.
 
  
 0.821
infB
Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.819
BF49_0049
Transcription termination protein NusA.
  
    0.789
rimP
FIG000325 clustered with transcription termination protein NusA; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
  
 0.673
BF49_7365
FIG000325 clustered with transcription termination protein NusA.
 
  
 0.673
pnp
Polyribonucleotide nucleotidyltransferase EC 2778; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.643
BF49_0046
Translation initiation factor 2.
 
  
 0.642
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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