rpsO protein (Bradyrhizobium sp.) - STRING interaction network

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rpsO

SSU ribosomal protein S15p S13e; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)

Predicted Functional Partners:

rpsQ

0.987

rplM

0.982

rpsI

0.982

rpsB

0.982

rplD

0.979

rpsR

0.978

rplP

0.978

rpsM

0.978

rpsH

0.977

rpsK

0.977

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplM	BF49_6231	BF49_6600	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.991
rplD	rplP	BF49_6231	BF49_6237	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L16p L10e; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.998
rplD	rpsB	BF49_6231	BF49_6701	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S2p SAe; Belongs to the universal ribosomal protein uS2 family.	0.996
rplD	rpsH	BF49_6231	BF49_6244	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S8p S15Ae; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.996
rplD	rpsI	BF49_6231	BF49_6601	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.993
rplD	rpsK	BF49_6231	BF49_6254	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S11p S14e; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.994
rplD	rpsM	BF49_6231	BF49_6253	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S13p S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.994
rplD	rpsO	BF49_6231	BF49_0058	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S15p S13e; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.979
rplD	rpsQ	BF49_6231	BF49_6239	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S17p S11e; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
rplD	rpsR	BF49_6231	BF49_0989	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S18p SSU ribosomal protein S18p zincindependent; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.978
rplM	rplD	BF49_6600	BF49_6231	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.	0.991
rplM	rplP	BF49_6600	BF49_6237	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L16p L10e; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.996
rplM	rpsB	BF49_6600	BF49_6701	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S2p SAe; Belongs to the universal ribosomal protein uS2 family.	0.994
rplM	rpsH	BF49_6600	BF49_6244	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S8p S15Ae; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.994
rplM	rpsI	BF49_6600	BF49_6601	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsK	BF49_6600	BF49_6254	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S11p S14e; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.992
rplM	rpsM	BF49_6600	BF49_6253	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S13p S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.993
rplM	rpsO	BF49_6600	BF49_0058	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15p S13e; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.982
rplM	rpsQ	BF49_6600	BF49_6239	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S17p S11e; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.995
rplM	rpsR	BF49_6600	BF49_0989	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S18p SSU ribosomal protein S18p zincindependent; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.989