Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0068FIG01004913 hypothetical protein. (176 aa)    
Predicted Functional Partners:
BF49_0086
FIG041266 ATPdependent nuclease subunit B.
  
     0.691
BF49_0201
Transporter.
  
     0.691
BF49_5156
FIG00443822 hypothetical protein.
  
     0.681
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.676
BF49_3350
Bll1313 protein.
  
     0.671
BF49_0126
Glutathione Stransferase family protein.
  
     0.668
secE
Preprotein translocase subunit SecE TC 3A511; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.667
BF49_0596
FIG003437 hypothetical with DnaJlike domain.
  
     0.666
BF49_0622
CarDlike transcriptional regulator.
  
     0.654
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.642
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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