Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0086FIG041266 ATPdependent nuclease subunit B. (1048 aa)    
Predicted Functional Partners:
BF49_0087
FIG061771 ATPdependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
 
  
 0.989
BF49_5106
ATPdependent DNA helicase UvrDPcrA.
   
  0.792
BF49_6150
ATPdependent DNA helicase UvrDPcrA proteobacterial paralog.
   
  0.792
BF49_0230
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.768
BF49_5156
FIG00443822 hypothetical protein.
  
     0.738
BF49_0218
DNA polymerase III delta subunit EC 2777.
 
   
 0.733
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.725
BF49_0596
FIG003437 hypothetical with DnaJlike domain.
 
     0.717
BF49_3350
Bll1313 protein.
  
     0.716
BF49_0201
Transporter.
  
     0.715
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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