Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0087FIG061771 ATPdependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily. (1169 aa)    
Predicted Functional Partners:
BF49_0086
FIG041266 ATPdependent nuclease subunit B.
 
  
 0.989
BF49_4484
RecDlike DNA helicase Atu2026.
  
 0.958
BF49_5106
ATPdependent DNA helicase UvrDPcrA.
 
  
 0.942
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
  
 0.937
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.837
BF49_0126
Glutathione Stransferase family protein.
  
     0.739
BF49_3350
Bll1313 protein.
  
     0.738
BF49_0541
ATPdependent DNA helicase RecQ.
    
 0.735
BF49_0088
FIG149041 Thioredoxin; Belongs to the thioredoxin family.
       0.732
BF49_5156
FIG00443822 hypothetical protein.
  
     0.732
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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