STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0087FIG061771 ATPdependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily. (1169 aa)    
Predicted Functional Partners:
BF49_0086
FIG041266 ATPdependent nuclease subunit B.
 
   
 0.965
BF49_4484
RecDlike DNA helicase Atu2026.
  
 0.930
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.833
BF49_0126
Glutathione Stransferase family protein.
  
     0.739
BF49_3350
Bll1313 protein.
  
     0.738
BF49_5156
FIG00443822 hypothetical protein.
  
     0.732
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.720
BF49_0961
DNA polymerase III chi subunit EC 2777.
  
   
 0.703
BF49_0230
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.697
BF49_0218
DNA polymerase III delta subunit EC 2777.
 
     0.646
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.