Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_0106Organic hydroperoxide resistance protein. (141 aa)    
Predicted Functional Partners:
BF49_0105
Organic hydroperoxide resistance transcriptional regulator.
  
 0.974
BF49_2885
Starvation-inducible DNA-binding protein; Nonspecific DNAbinding protein Dps Ironbinding ferritinlike antioxidant protein Ferroxidase EC 11631; Belongs to the Dps family.
  
  
 0.766
BF49_2142
Twocomponent hybrid sensor and regulator.
  
  
 0.627
BF49_4896
Serine protein kinase prkA protein Ploop containing.
   
  
 0.584
BF49_6557
Outer membrane lipoprotein OmlA.
   
  
 0.582
BF49_0770
ThiJPfpI family protein.
  
  
 0.570
BF49_2393
FIG00441768 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.558
BF49_3886
UPF0337 protein blr1496; Belongs to the UPF0337 (CsbD) family.
  
  
 0.558
BF49_4273
Conserved hypothetical protein hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.558
BF49_0486
LysM domain protein.
   
  
 0.545
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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