Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0121FIG00793979 hypothetical protein. (242 aa)    
Predicted Functional Partners:
BF49_0120
OstAlike protein.
 
  
 0.989
BF49_0119
ABC transporter ATPbinding protein.
    
  0.958
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.765
BF49_4274
Probable periplasmic protein Cj0610c imported Campylobacter jejuni strain NCTC 11168.
  
     0.639
BF49_2744
Signal transduction histidine kinase.
  
     0.630
BF49_6593
FIG00440354 hypothetical protein.
  
     0.625
BF49_5754
Kinesinlike protein.
  
     0.623
BF49_6439
ATPGTPbinding site motif A.
  
     0.615
BF49_0118
RNA polymerase sigma54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.614
BF49_6908
Invasion protein B involved in pathogenesis.
  
     0.609
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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