BF49_0223 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_0223

Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (229 aa)

Predicted Functional Partners:

BF49_2980

0.875

BF49_0299

0.824

BF49_0820

0.780

rpmC

0.737

BF49_3391

0.730

rplX

0.727

BF49_5049

0.725

BF49_0205

0.663

rpmJ

0.622

cmk

0.618

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0205	BF49_0223	BF49_0205	BF49_0223	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	0.663
BF49_0205	BF49_3391	BF49_0205	BF49_3391	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.926
BF49_0205	cmk	BF49_0205	BF49_0101	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Cytidylate kinase EC 27425.	0.930
BF49_0223	BF49_0205	BF49_0223	BF49_0205	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.663
BF49_0223	BF49_0299	BF49_0223	BF49_0299	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	Integral membrane protein YggT involved in response to extracytoplasmic stress osmotic shock.	0.824
BF49_0223	BF49_0820	BF49_0223	BF49_0820	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.	0.780
BF49_0223	BF49_2980	BF49_0223	BF49_2980	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	COG1496 Uncharacterized conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family.	0.875
BF49_0223	BF49_3391	BF49_0223	BF49_3391	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.730
BF49_0223	BF49_5049	BF49_0223	BF49_5049	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	UDPNacetylmuramoylalanylDglutamyl26 diaminopimelateDalanylDalanine ligase EC 63210.	0.725
BF49_0223	cmk	BF49_0223	BF49_0101	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	Cytidylate kinase EC 27425.	0.618
BF49_0223	rplX	BF49_0223	BF49_6241	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	LSU ribosomal protein L24p L26e; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.727
BF49_0223	rpmC	BF49_0223	BF49_6238	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	LSU ribosomal protein L29p L35e; Belongs to the universal ribosomal protein uL29 family.	0.737
BF49_0223	rpmJ	BF49_0223	BF49_3083	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.	0.622
BF49_0299	BF49_0223	BF49_0299	BF49_0223	Integral membrane protein YggT involved in response to extracytoplasmic stress osmotic shock.	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	0.824
BF49_0820	BF49_0223	BF49_0820	BF49_0223	Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	0.780
BF49_2980	BF49_0223	BF49_2980	BF49_0223	COG1496 Uncharacterized conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family.	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	0.875
BF49_2980	BF49_5049	BF49_2980	BF49_5049	COG1496 Uncharacterized conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family.	UDPNacetylmuramoylalanylDglutamyl26 diaminopimelateDalanylDalanine ligase EC 63210.	0.536
BF49_3391	BF49_0205	BF49_3391	BF49_0205	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.926
BF49_3391	BF49_0223	BF49_3391	BF49_0223	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.	0.730
BF49_3391	cmk	BF49_3391	BF49_0101	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	Cytidylate kinase EC 27425.	0.910

page 1 of 2

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About