STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0244FIG002473 Protein YcaR in KDO2Lipid A biosynthesis cluster; Belongs to the UPF0434 family. (65 aa)    
Predicted Functional Partners:
BF49_3011
ProteinN5glutamine methyltransferase PrmB methylates LSU ribosomal protein L3p; Belongs to the protein N5-glutamine methyltransferase family.
 
 
 0.630
BF49_0245
Transcriptional regulator TetR family.
       0.612
kdsB
3deoxymannooctulosonate cytidylyltransferase EC 27738; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.576
prmC
ProteinN5glutamine methyltransferase PrmC methylates polypeptide chain release factors RF1 and RF2; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
 
 
 0.498
BF49_6434
Bis5nucleosyltetraphosphatase asymmetrical EC 36117.
  
    0.450
BF49_0246
FIG00439985 hypothetical protein.
       0.447
BF49_3497
HIT1 PROTEIN.
  
    0.443
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.