Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0262Heparinase IIIIIlike. (585 aa)    
Predicted Functional Partners:
BF49_0263
16S rRNA m5C 967 methyltransferase EC 211; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.705
BF49_3980
FIG00450046 hypothetical protein.
  
     0.689
purH
IMP cyclohydrolase EC 35410 Phosphoribosylaminoimidazolecarboxamide formyltransferase EC 2123.
       0.656
BF49_0230
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.632
BF49_0113
FIG00442128 hypothetical protein.
  
     0.627
BF49_4472
FIG065752 hypothetical protein.
  
     0.615
BF49_0083
N-acetylmuramate 1-kinase; TsaE protein required for threonylcarbamoyladenosine t6A37 formation in tRNA Phosphotransferase involved in threonylcarbamoyladenosine t6A37 formation in tRNA.
  
   
 0.607
BF49_4395
Predicted integral membrane protein.
  
     0.573
BF49_3954
Sensor histidine kinase ChvG EC 273.
  
     0.569
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.568
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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