Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_026316S rRNA m5C 967 methyltransferase EC 211; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (437 aa)    
Predicted Functional Partners:
rlmE
Heat shock protein FtsJRrmJ Ribosomal RNA large subunit methyltransferase E EC 211; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
 0.909
rplJ
LSU ribosomal protein L10p P0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 0.897
rpmD
LSU ribosomal protein L30p L7e.
   
 0.893
rplW
LSU ribosomal protein L23p L23Ae; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 0.883
rplV
LSU ribosomal protein L22p L17e; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
   
  0.858
BF49_0619
ATPDEPENDENT DNA HELICASE.
 
 0.821
BF49_0100
SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
 
 0.797
BF49_1883
Serinethreonine protein kinase.
  
 
 0.796
BF49_0711
ATPdependent RNA helicase Atu1833; Belongs to the DEAD box helicase family.
  
 0.795
BF49_4223
ATPdependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
  
 0.795
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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