STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0265InterPro IPR006021 COGs COG1525. (195 aa)    
Predicted Functional Partners:
BF49_0264
Hypothetical protein.
       0.678
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.625
BF49_3972
ATPdependent helicase HrpB.
    
 0.613
BF49_6786
Sporulation related domain.
 
     0.579
BF49_5825
FIG00852664 hypothetical protein.
  
     0.566
BF49_3063
FIG00441725 hypothetical protein.
  
     0.540
BF49_2946
FIG00853207 hypothetical protein.
  
     0.520
BF49_3904
Blr0101 hypothetical protein.
  
     0.517
BF49_7074
Phosphatidylglycerophosphatase B EC 31327.
  
    0.517
BF49_0275
FIG006581 hypothetical protein.
  
     0.516
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.