Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0269Transcriptional regulator ArsR family. (151 aa)    
Predicted Functional Partners:
BF49_0270
Adenylate cyclase EC 4611 Guanylate cyclase EC 4612.
 
     0.616
BF49_5961
FIG00440141 hypothetical protein.
  
     0.576
BF49_6337
Transcriptional regulator ArsR family.
 
  
 0.482
BF49_5962
FIG00443128 hypothetical protein.
  
     0.470
BF49_6387
Multimeric flavodoxin WrbA.
  
     0.461
BF49_3014
PUTATIVE METHYLTRANSFERASE.
  
     0.454
BF49_5010
Bll6640 hypothetical protein.
 
     0.454
BF49_6677
ABC transporter substratebinding protein.
  
     0.450
BF49_1056
Transcriptional regulator ArsR family.
 
  
 0.447
BF49_3129
Gfalike protein.
 
     0.441
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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