STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0271FIG006231 RNAbinding protein. (137 aa)    
Predicted Functional Partners:
tsaD
TsaDKae1Qri7 protein required for threonylcarbamoyladenosine t6A37 formation in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.862
gpsA
Glycerol3phosphate dehydrogenase NADP EC 11194; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.853
BF49_1924
Cytochrome c oxidase subunit CcoO EC 1931.
   
 
  0.717
BF49_1925
Cytochrome c oxidase subunit CcoN EC 1931; Belongs to the heme-copper respiratory oxidase family.
   
 
  0.706
BF49_1922
Cytochrome c oxidase subunit CcoP EC 1931; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.704
BF49_4007
Cytochrome c oxidase polypeptide II EC 1931; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.670
BF49_4012
Cytochrome c oxidase polypeptide III EC 1931.
     
 0.650
BF49_6648
NADHubiquinone oxidoreductase chain J EC 1653; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
     
  0.632
BF49_0274
UroporphyrinogenIII synthase EC 42175; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.615
BF49_4203
Peptidase B EC 341123; Belongs to the peptidase M17 family.
     
  0.600
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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