Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0276FIG000868 Homolog of E coli HemY protein. (599 aa)    
Predicted Functional Partners:
BF49_0275
FIG006581 hypothetical protein.
 
   
 0.841
BF49_0274
UroporphyrinogenIII synthase EC 42175; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.778
BF49_3272
Methylaccepting chemotaxis protein.
  
  
 0.739
BF49_6557
Outer membrane lipoprotein OmlA.
  
     0.739
BF49_3980
FIG00450046 hypothetical protein.
  
     0.675
BF49_0218
DNA polymerase III delta subunit EC 2777.
 
     0.673
BF49_0319
FIG00740902 hypothetical protein.
  
     0.667
BF49_0326
FIG00740902 hypothetical protein.
  
     0.667
BF49_0192
FIG00439805 hypothetical protein.
  
     0.665
BF49_3271
Methylaccepting chemotaxis protein.
  
  
 0.650
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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