Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
BF49_0332Pyridoxamine 5phosphate oxidase EC 1435. (165 aa)    
Predicted Functional Partners:
BF49_0820
Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.
     
  0.600
pdxJ
Pyridoxine 5phosphate synthase EC 26992; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.597
BF49_4273
Conserved hypothetical protein hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
    0.578
BF49_0333
Lactoylglutathione lyase and related lyases.
       0.576
BF49_2393
FIG00441768 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.573
BF49_3886
UPF0337 protein blr1496; Belongs to the UPF0337 (CsbD) family.
  
    0.573
BF49_2063
Calciumproton exchanger.
 
    0.536
BF49_0334
FIG00441277 hypothetical protein.
       0.529
BF49_2147
ThiJPfpI family protein.
 
  
 0.522
BF49_4760
Catalase EC11116.
 
  
 0.506
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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